Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
23
Hi-C
13
single cell RNA-seq
ATAC-seq
MPRA
1
snATAC-seq
Assay category
72
Transcription
23
3D chromatin structure
1
DNA accessibility
Date released
89
February, 2021
59
August, 2021
10
March, 2020
7
May, 2022
4
February, 2023
4
October, 2019
3
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3217
bam
3033
bigWig
1586
tsv
1539
bed narrowPeak
1297
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
157
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
180
Homo sapiens
Biosample type
168
tissue
6
primary cell
4
in vitro differentiated cells
2
cell line
Organ
88
bone element
63
kidney
13
pancreas
6
epithelium
4
skeleton
3
blood vessel
3
heart
3
musculature of body
3
vasculature
2
liver
2
vein
Project
176
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
110
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
Audit category:
89
inconsistent ontology term
10
audit script error
assay_title!
MPRA
ATAC-seq
BIOSAMPLE
ASSAY
180 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
Hi-C
single cell RNA-seq
snATAC-seq
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
2
psoas muscle
2
acetabular part of hip bone
1
+ See 10 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
Download