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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
23
Hi-C
15
ATAC-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
23
3D chromatin structure
16
DNA accessibility
Date released
91
February, 2021
59
August, 2021
17
February, 2023
10
March, 2020
7
May, 2022
4
October, 2019
4
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
195
Homo sapiens
Biosample type
173
tissue
12
in vitro differentiated cells
7
primary cell
4
cell line
Organ
92
bone element
63
kidney
13
pancreas
8
skeleton
6
connective tissue
6
epithelium
3
blood vessel
3
heart
3
liver
3
musculature of body
3
vasculature
2
vein
1
brain
Project
192
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
38
hg19
3
GRCh38
Lab
123
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
90
inconsistent ontology term
10
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
196 results
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RNA microarray
total RNA-seq
Hi-C
ATAC-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 11 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
1
1
EndoC_BH1
1
MIN6
1
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