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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
24
Hi-C
19
RRBS
17
WGBS
13
single cell RNA-seq
3
ATAC-seq
3
pCHi-C
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
36
DNA methylation
24
3D chromatin structure
4
DNA accessibility
Date released
89
February, 2021
60
August, 2021
23
July, 2019
12
March, 2020
7
February, 2023
7
May, 2022
7
November, 2018
6
August, 2017
4
October, 2019
4
October, 2022
2
November, 2019
1
August, 2018
1
March, 2019
1
March, 2023
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
223
Homo sapiens
Biosample type
194
tissue
16
primary cell
10
in vitro differentiated cells
4
cell line
Organ
88
bone element
67
kidney
20
pancreas
12
epithelium
11
heart
7
musculature of body
5
liver
5
vasculature
4
blood vessel
4
connective tissue
4
skeleton
3
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
220
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
47
hg19
18
GRCh38
Lab
150
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
1
ITG
Audit category:
94
inconsistent ontology term
10
audit script error
BIOSAMPLE
ASSAY
224 results
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RNA microarray
total RNA-seq
Hi-C
RRBS
WGBS
single cell RNA-seq
ATAC-seq
pCHi-C
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
1
1
13
islet of Langerhans
6
3
1
heart left ventricle
1
1
2
pancreas
1
1
2
+ See 17 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
+ See 10 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
+ See 2 more…
cell line
HepG2
1
1
EndoC_BH1
1
MIN6
1
See all biosamples
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