Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
8
single cell RNA-seq
7
Hi-C
3
ATAC-seq
Assay category
63
Transcription
7
3D chromatin structure
3
DNA accessibility
Date released
59
August, 2021
6
May, 2022
3
February, 2023
3
October, 2022
1
March, 2019
1
March, 2023
Available data
270
bigWig
234
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
73
Homo sapiens
Biosample type
65
tissue
4
primary cell
3
in vitro differentiated cells
1
cell line
Organ
58
kidney
10
pancreas
3
epithelium
1
liver
Project
69
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
73 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
Hi-C
ATAC-seq
tissue
kidney
49
8
1
islet of Langerhans
6
1
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
Download