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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
22
Hi-C
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
22
3D chromatin structure
15
Transcription
4
DNA accessibility
Date released
89
February, 2021
10
March, 2020
7
February, 2023
7
May, 2022
4
October, 2019
4
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2023
Available data
3392
bam
3169
bigWig
1753
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
125
Homo sapiens
Biosample type
110
tissue
7
in vitro differentiated cells
6
primary cell
3
cell line
Organ
88
bone element
13
pancreas
6
epithelium
5
kidney
4
skeleton
3
blood vessel
3
heart
3
musculature of body
3
vasculature
2
liver
2
vein
Project
122
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
25
hg19
1
GRCh38
Lab
111
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
90
inconsistent ontology term
10
audit script error
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
126 results
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RNA microarray
Hi-C
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
2
6
kidney
5
psoas muscle
2
acetabular part of hip bone
1
+ See 10 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
MIN6
1
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