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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
55
total RNA-seq
8
single cell RNA-seq
7
Hi-C
Assay category
67
DNA accessibility
63
Transcription
7
3D chromatin structure
Date released
123
August, 2021
6
May, 2022
3
February, 2023
3
October, 2022
1
March, 2019
1
March, 2023
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
137
Homo sapiens
Biosample type
129
tissue
4
primary cell
3
in vitro differentiated cells
1
cell line
Organ
122
kidney
10
pancreas
3
epithelium
1
liver
Project
133
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
65
GRCh38
9
hg19
Lab
122
Katalin Susztak, Upenn
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
137 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
tissue
kidney
64
49
8
1
islet of Langerhans
6
1
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
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