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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
6
Hi-C
5
single cell RNA-seq
4
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
6
3D chromatin structure
1
DNA accessibility
Date released
89
February, 2021
March, 2020
4
February, 2023
4
October, 2019
2
November, 2019
1
May, 2022
1
October, 2022
Available data
3171
bam
2839
bigWig
1540
bed narrowPeak
1443
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
8
csv
6
bedpe bed3+
6
hic
5
hdf5
4
bed bedgraph
4
tar
1
tagAlign bed3+
Organism
100
Homo sapiens
Biosample type
96
tissue
2
cell line
2
in vitro differentiated cells
1
primary cell
Organ
88
bone element
5
kidney
4
skeleton
2
epithelium
2
pancreas
1
blood vessel
1
heart
1
musculature of body
1
vasculature
1
vein
Project
101
AMP
Genome assembly (visualization)
7
hg19
Lab
101
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
87
inconsistent ontology term
7
audit script error
month_released!
March, 2020
BIOSAMPLE
ASSAY
101 results
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RNA microarray
Hi-C
single cell RNA-seq
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
heart
1
ilium
1
+ See 4 more…
cell line
EndoC_BH1
1
MIN6
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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