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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
16
Hi-C
5
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
16
3D chromatin structure
5
Transcription
1
DNA accessibility
Date released
89
February, 2021
10
March, 2020
4
October, 2019
2
November, 2019
1
May, 2022
1
October, 2022
Available data
3179
bam
2859
bigWig
1535
bed narrowPeak
1488
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
91
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
8
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
106
Homo sapiens
Biosample type
99
tissue
4
in vitro differentiated cells
2
cell line
2
primary cell
Organ
88
bone element
5
kidney
skeleton
3
blood vessel
3
epithelium
3
heart
3
musculature of body
3
pancreas
3
vasculature
2
vein
1
liver
Project
107
AMP
Genome assembly (visualization)
17
hg19
Lab
107
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
89
inconsistent ontology term
7
audit script error
organ_slims!
skeleton
BIOSAMPLE
ASSAY
107 results
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RNA microarray
Hi-C
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
psoas muscle
2
aorta
1
heart
1
+ See 6 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
MIN6
1
primary cell
endothelial cell of umbilical vein
2
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