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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
23
Hi-C
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
23
3D chromatin structure
1
DNA accessibility
Date released
89
February, 2021
59
August, 2021
10
March, 2020
February, 2023
7
May, 2022
4
October, 2019
4
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3166
bigWig
1752
bed narrowPeak
1584
tsv
1282
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
bed bed3
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
176
Homo sapiens
Biosample type
164
tissue
6
primary cell
4
in vitro differentiated cells
3
cell line
Organ
84
bone element
63
kidney
13
pancreas
6
epithelium
3
blood vessel
3
heart
3
musculature of body
3
vasculature
2
liver
2
vein
Project
173
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
107
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
Audit category:
89
inconsistent ontology term
10
audit script error
month_released!
February, 2023
BIOSAMPLE
ASSAY
177 results
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RNA microarray
total RNA-seq
Hi-C
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
1
13
islet of Langerhans
6
2
psoas muscle
2
aorta
1
+ See 6 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
MIN6
1
See all biosamples
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