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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
65
single cell RNA-seq
53
total RNA-seq
22
snATAC-seq
16
Hi-C
3
ATAC-seq
1
MPRA
Assay category
118
Transcription
25
DNA accessibility
16
3D chromatin structure
Date released
89
February, 2021
59
August, 2021
55
May, 2022
19
September, 2020
9
March, 2020
7
February, 2023
4
October, 2019
1
March, 2023
1
October, 2022
Available data
2703
bam
2546
bigWig
1603
bed narrowPeak
1183
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
243
Homo sapiens
Biosample type
159
tissue
76
primary cell
7
in vitro differentiated cells
2
cell line
Organ
pancreas
88
bone element
86
epithelium
63
kidney
4
skeleton
3
blood vessel
3
heart
3
musculature of body
3
vasculature
2
liver
2
vein
Project
170
AMP
73
HPAP
1
ITG
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
108
AMP-T2D consortium
73
Klaus Kaestner, Upenn
58
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
ITG
Audit category:
89
inconsistent ontology term
7
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
244 results
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RNA microarray
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
ATAC-seq
MPRA
tissue
bone element
84
kidney
13
49
1
psoas muscle
2
acetabular part of hip bone
1
aorta
1
+ See 8 more…
primary cell
Langerhans cell
52
21
endothelial cell of umbilical vein
2
chondrocytes
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 1 more…
cell line
HepG2
1
MIN6
1
See all biosamples
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