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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
46
ATAC-seq
41
WGBS
23
Hi-C
21
snATAC-seq
Assay category
67
DNA accessibility
52
Transcription
41
DNA methylation
23
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
10
March, 2020
4
February, 2021
4
October, 2019
3
February, 2023
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
183
Homo sapiens
Biosample type
159
primary cell
11
in vitro differentiated cells
11
tissue
2
cell line
Organ
87
pancreas
86
epithelium
4
connective tissue
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
156
HPAP
26
AMP
1
ITG
Genome assembly (visualization)
29
hg19
1
GRCh38
Lab
156
Klaus Kaestner, Upenn
20
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
183 results
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single cell RNA-seq
ATAC-seq
WGBS
Hi-C
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
+ See 1 more…
in vitro differentiated cells
adipocyte
4
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
+ See 2 more…
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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