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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
22
Hi-C
21
snATAC-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
22
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
10
March, 2020
4
October, 2019
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2023
Available data
3248
bam
2998
bigWig
1594
bed narrowPeak
1576
tsv
1358
fastq
938
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
195
bed bed3+
153
zippedFastqFolder
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
175
Homo sapiens
Biosample type
159
primary cell
10
tissue
4
in vitro differentiated cells
2
cell line
Organ
87
pancreas
86
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
kidney
Project
156
HPAP
18
AMP
1
ITG
Genome assembly (visualization)
21
hg19
1
GRCh38
Lab
156
Klaus Kaestner, Upenn
16
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
4
audit script error
organ_slims!
kidney
BIOSAMPLE
ASSAY
175 results
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single cell RNA-seq
WGBS
ATAC-seq
Hi-C
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
+ See 1 more…
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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