Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
103
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
9
Hi-C
2
FAIRE-seq
1
RRBS
Assay category
220
DNA binding
103
Transcription
41
DNA accessibility
11
DNA methylation
9
3D chromatin structure
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
173
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2020
2
July, 2018
2
March, 2019
1
August, 2021
1
November, 2019
1
October, 2019
Available data
1863
bam
1715
bigWig
1069
tsv
933
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
377
Homo sapiens
Biosample type
429
cell line
415
primary cell
384
tissue
145
in vitro differentiated cells
4
stem cell
Organ
216
pancreas
84
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
musculature of body
3
heart
1
blood vessel
1
kidney
1
vasculature
Project
384
AMP
Genome assembly (visualization)
301
hg19
280
GRCh38
Lab
356
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
384 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
RRBS
tissue
islet of Langerhans
28
103
20
1
2
1
liver
67
2
1
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
1
+ See 12 more…
See all biosamples
Download