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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
6
RRBS
Assay category
6
3D chromatin structure
6
DNA methylation
Date released
6
July, 2019
3
October, 2022
1
March, 2020
1
November, 2019
1
October, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
12
Homo sapiens
Biosample type
11
primary cell
1
cell line
Organ
13
pancreas
12
epithelium
11
heart
6
musculature of body
5
kidney
5
liver
5
vasculature
4
blood vessel
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
9
AMP
3
HPAP
Genome assembly (visualization)
12
hg19
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
12 results
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Hi-C
RRBS
primary cell
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 5 more…
cell line
EndoC_BH1
1
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