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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
4
total RNA-seq
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
27
DNA binding
6
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
13
August, 2017
6
May, 2019
5
July, 2019
4
March, 2020
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
70
Homo sapiens
Biosample type
59
tissue
11
primary cell
Organ
630
pancreas
624
liver
570
connective tissue
425
adipose tissue
307
epithelium
222
brain
187
heart
158
vasculature
153
blood vessel
132
kidney
91
limb
85
artery
70
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
17
vein
16
spleen
6
eye
1
pericardium
1
pituitary gland
Project
70
AMP
Genome assembly (visualization)
69
hg19
53
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
13
1
1
1
psoas muscle
2
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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