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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
2
pCHi-C
1
Hi-C
Assay category
4
DNA accessibility
1
3D chromatin structure
Date released
4
February, 2021
2
March, 2020
1
March, 2019
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
tissue
Organ
4
connective tissue
1
pancreas
Project
7
AMP
Genome assembly (visualization)
7
hg19
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
txt
BIOSAMPLE
ASSAY
7 results
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ATAC-seq
pCHi-C
Hi-C
in vitro differentiated cells
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
tissue
islet of Langerhans
1
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