Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
Hi-C
19
RRBS
17
WGBS
2
pCHi-C
Assay category
36
DNA methylation
23
3D chromatin structure
Date released
23
July, 2019
12
March, 2020
7
November, 2018
6
August, 2017
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
61
Homo sapiens
Biosample type
36
tissue
16
primary cell
6
in vitro differentiated cells
3
cell line
Organ
13
pancreas
12
epithelium
11
heart
6
musculature of body
5
kidney
5
liver
5
vasculature
4
blood vessel
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
57
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
43
hg19
18
GRCh38
Lab
54
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
9
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
61 results
search-icon
table-tab-icon
Clear Filters
Hi-C
RRBS
WGBS
pCHi-C
tissue
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
2
1
adipose tissue
2
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
+ See 10 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
Download