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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
8
single cell RNA-seq
2
pCHi-C
Assay category
64
DNA accessibility
8
Transcription
Date released
64
August, 2021
6
February, 2021
2
March, 2020
1
November, 2018
1
September, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
74
Homo sapiens
Biosample type
70
tissue
2
in vitro differentiated cells
2
primary cell
Organ
69
kidney
1
liver
Project
74
AMP
Genome assembly (visualization)
64
GRCh38
2
hg19
Lab
64
Katalin Susztak, Upenn
10
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
single cell RNA-seq
pCHi-C
tissue
kidney
64
5
liver
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
pancreatic cell
2
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