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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 52single cell RNA-seq
  • 41WGBS
  • 39ATAC-seq
  • 21snATAC-seq
  • 2pCHi-C
Assay category
  • 60DNA accessibility
  • 52Transcription
  • 41DNA methylation
Date released
  • 134May, 2022
  • 19September, 2020
  • 2March, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 155Homo sapiens
Biosample type
  • 153primary cell
  • 2in vitro differentiated cells
Organ
  • 80epithelium
  • 80pancreas
Project
  • 153HPAP
  • 2AMP
Genome assembly (visualization)
  • 2hg19
Lab
  • 153Klaus Kaestner, Upenn
  • 2AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
BIOSAMPLE
ASSAY

155 results

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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell5221
pancreatic alpha cell2522
pancreatic beta cell1613
pancreatic acinar cell4
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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