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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
Assay category
237
DNA binding
Target of assay
237
histone
237
histone modification
135
narrow histone mark
102
broad histone mark
transcription factor
Date released
85
May, 2021
54
November, 2017
40
October, 2019
19
May, 2020
17
August, 2017
16
August, 2021
6
October, 2017
Available data
2516
bam
2447
bigWig
1400
tsv
1172
bed narrowPeak
626
bigBed narrowPeak
539
fastq
246
bed broadPeak
239
bed bed3+
237
tagAlign
231
bigBed broadPeak
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
231
Homo sapiens
Biosample type
116
tissue
98
primary cell
14
in vitro differentiated cells
9
cell line
Organ
82
brain
31
liver
7
pancreas
4
epithelium
1
pituitary gland
Project
153
AMP
84
T1D
Genome assembly (visualization)
237
GRCh38
229
hg19
Lab
153
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
tissue
liver
19
caudate nucleus
12
substantia nigra
12
layer of hippocampus
11
brain
6
+ See 40 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
13
pancreatic PP cell
1
cell line
HepG2
9
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