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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
Assay category
109
DNA binding
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
6
control
5
transcription factor
Date released
84
May, 2021
12
August, 2017
8
February, 2021
4
August, 2021
1
November, 2017
Available data
1160
bam
1104
bigWig
805
fastq
670
bed narrowPeak
439
bigBed narrowPeak
389
tsv
153
zippedFastqFolder
109
tagAlign
95
bed broadPeak
95
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
109
Homo sapiens
Biosample type
238
tissue
100
primary cell
40
in vitro differentiated cells
9
cell line
Organ
6
artery
6
blood vessel
6
heart
6
vasculature
5
liver
4
epithelium
Project
84
T1D
25
AMP
Genome assembly (visualization)
105
hg19
103
GRCh38
Lab
84
Kyle Gaulton, UCSD
25
AMP-T2D consortium
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
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