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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
Assay category
371
DNA binding
Target of assay
306
histone
306
histone modification
166
narrow histone mark
140
broad histone mark
62
control
3
transcription factor
Date released
87
May, 2021
85
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
Available data
2544
bam
2356
bigWig
1360
tsv
1237
bed narrowPeak
674
fastq
612
bigBed narrowPeak
371
tagAlign
249
bed bed3+
241
bed broadPeak
204
bigBed broadPeak
160
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
17
bedpe bed3+
16
hic
11
bed bed3
8
csv
7
bed bedgraph
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
364
Homo sapiens
Biosample type
238
tissue
96
primary cell
37
in vitro differentiated cells
cell line
Organ
118
brain
74
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
epithelium
1
pituitary gland
Project
287
AMP
84
T1D
Genome assembly (visualization)
227
GRCh38
216
hg19
Lab
287
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
organ_slims!
epithelium
BIOSAMPLE
ASSAY
371 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
See all biosamples
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