Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
ChIP-seq
11
ATAC-seq
Assay category
298
DNA binding
11
DNA accessibility
Target of assay
223
histone
223
histone modification
127
narrow histone mark
96
broad histone mark
66
control
9
transcription factor
Date released
78
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
10
February, 2023
9
February, 2021
6
May, 2021
Available data
2783
bam
2516
bigWig
1482
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
302
Homo sapiens
Biosample type
243
tissue
primary cell
45
in vitro differentiated cells
21
cell line
Organ
119
brain
83
liver
27
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
bone element
4
skeleton
3
epithelium
1
pituitary gland
Project
309
AMP
Genome assembly (visualization)
150
hg19
149
GRCh38
Lab
309
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent replicate
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
309 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
70
substantia nigra
16
brain
14
1
caudate nucleus
15
layer of hippocampus
15
+ See 47 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
chondrocyte
5
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
1
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
Download