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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
3
ATAC-seq
Assay category
40
DNA binding
3
DNA accessibility
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
10
control
4
transcription factor
Date released
20
August, 2021
14
August, 2017
6
May, 2021
3
February, 2023
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
43
Homo sapiens
Biosample type
395
tissue
100
primary cell
43
in vitro differentiated cells
21
cell line
Organ
14
connective tissue
3
epithelium
3
pancreas
Project
43
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
40
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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