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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
10
RRBS
Assay category
100
DNA binding
10
DNA methylation
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
2
control
Date released
84
May, 2021
13
August, 2017
9
July, 2019
4
August, 2021
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
110
Homo sapiens
Biosample type
263
tissue
110
primary cell
40
in vitro differentiated cells
21
cell line
Organ
10
epithelium
5
liver
3
kidney
1
brain
1
connective tissue
1
eye
1
heart
1
musculature of body
1
vasculature
Project
84
T1D
26
AMP
Genome assembly (visualization)
109
hg19
98
GRCh38
Lab
84
Kyle Gaulton, UCSD
26
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
RRBS
primary cell
monocyte
84
skeletal muscle myoblast
12
1
hepatocyte
4
1
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
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