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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
Assay category
315
DNA binding
Target of assay
244
histone
244
histone modification
148
narrow histone mark
96
broad histone mark
66
control
5
transcription factor
Date released
90
May, 2021
68
August, 2017
50
May, 2020
49
October, 2019
24
August, 2021
24
November, 2017
8
October, 2017
2
February, 2021
Available data
3181
bam
2945
bigWig
1626
bed narrowPeak
1432
tsv
1358
fastq
bigBed narrowPeak
392
tagAlign
292
bed broadPeak
255
bigBed broadPeak
243
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
314
Homo sapiens
Biosample type
181
tissue
89
primary cell
40
in vitro differentiated cells
5
cell line
Organ
77
liver
67
brain
22
connective tissue
15
musculature of body
13
pancreas
8
adipose tissue
7
epithelium
6
artery
6
blood vessel
heart
6
vasculature
1
pituitary gland
Project
231
AMP
84
T1D
Genome assembly (visualization)
197
hg19
165
GRCh38
Lab
231
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bigBed narrowPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
islet of Langerhans
9
brain
8
cingulate gyrus
8
+ See 43 more…
primary cell
monocyte
84
hepatocyte
4
skeletal muscle myoblast
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
3
iPSC derived cell line
2
See all biosamples
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