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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
3
Hi-C
Assay category
19
DNA binding
3
3D chromatin structure
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
3
control
1
transcription factor
Date released
16
August, 2017
3
May, 2021
3
October, 2022
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
15
Homo sapiens
Biosample type
16
tissue
3
in vitro differentiated cells
3
primary cell
Organ
118
brain
86
liver
22
connective tissue
22
pancreas
15
musculature of body
10
epithelium
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
1
pituitary gland
Project
19
AMP
3
HPAP
Genome assembly (visualization)
17
hg19
8
GRCh38
Lab
19
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
Hi-C
tissue
islet of Langerhans
9
pancreas
7
in vitro differentiated cells
pancreatic PP cell
3
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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