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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
1
FAIRE-seq
Assay category
374
DNA binding
1
DNA accessibility
Target of assay
310
histone
310
histone modification
169
narrow histone mark
141
broad histone mark
64
control
transcription factor
Date released
86
May, 2021
85
August, 2017
66
November, 2017
50
May, 2020
50
October, 2019
24
August, 2021
14
October, 2017
Available data
2674
bam
2507
bigWig
1481
tsv
1296
bed narrowPeak
814
fastq
610
bigBed narrowPeak
374
tagAlign
258
bed broadPeak
251
bed bed3+
221
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
368
Homo sapiens
Biosample type
238
tissue
101
primary cell
36
in vitro differentiated cells
cell line
Organ
118
brain
74
liver
22
connective tissue
18
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
blood vessel
1
pituitary gland
1
vasculature
1
vein
Project
291
AMP
84
T1D
Genome assembly (visualization)
228
GRCh38
218
hg19
Lab
291
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
375 results
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Clear Filters
ChIP-seq
FAIRE-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
endothelial cell of umbilical vein
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
pancreatic PP cell
2
See all biosamples
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