Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
Assay category
253
DNA binding
Target of assay
187
histone
187
histone modification
126
narrow histone mark
61
broad histone mark
57
control
9
transcription factor
Date released
90
May, 2021
August, 2017
50
May, 2020
49
October, 2019
24
August, 2021
24
November, 2017
8
February, 2021
8
October, 2017
Available data
3110
bam
2897
bigWig
1675
bed narrowPeak
1511
tsv
1071
fastq
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
253
Homo sapiens
Biosample type
128
tissue
88
primary cell
26
in vitro differentiated cells
11
cell line
Organ
67
brain
57
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
1
pituitary gland
Project
169
AMP
84
T1D
Genome assembly (visualization)
180
hg19
169
GRCh38
Lab
169
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
August, 2017
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
253 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
50
brain
8
cingulate gyrus
8
layer of hippocampus
5
substantia nigra
5
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
HepG2
3
iPSC derived cell line
2
See all biosamples
Download