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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
81
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
189
DNA binding
109
DNA accessibility
Target of assay
165
histone
165
histone modification
84
broad histone mark
81
narrow histone mark
19
control
8
RNA binding protein
8
transcription factor
Date released
149
May, 2021
90
May, 2020
72
September, 2018
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
31
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
567
bigWig
551
bam
351
fastq
270
tsv
262
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
551
Homo sapiens
Biosample type
1755
tissue
582
cell line
551
primary cell
237
in vitro differentiated cells
3
stem cell
Organ
213
epithelium
153
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
371
AMP
180
T1D
Genome assembly (visualization)
528
hg19
483
GRCh38
Lab
371
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
August, 2017
BIOSAMPLE
ASSAY
551 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
4
pancreatic beta cell
10
12
6
pancreatic alpha cell
10
12
5
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