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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
305
ChIP-seq
Assay category
305
DNA binding
Target of assay
247
histone
247
histone modification
145
narrow histone mark
102
broad histone mark
54
control
4
transcription factor
Date released
90
May, 2021
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
2538
bam
2346
bigWig
1652
bed narrowPeak
1026
fastq
1000
bigBed narrowPeak
952
tsv
305
tagAlign
281
bed broadPeak
270
bigBed broadPeak
238
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
305
Homo sapiens
Biosample type
179
tissue
88
primary cell
26
in vitro differentiated cells
12
cell line
Organ
118
brain
66
liver
7
epithelium
3
pancreas
1
pituitary gland
Project
221
AMP
84
T1D
Genome assembly (visualization)
224
GRCh38
195
hg19
Lab
221
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
February, 2021
BIOSAMPLE
ASSAY
305 results
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Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
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