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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
Assay category
264
DNA binding
Target of assay
207
histone
207
histone modification
105
narrow histone mark
102
broad histone mark
48
control
9
transcription factor
Date released
90
May, 2021
August, 2017
78
November, 2017
50
May, 2020
October, 2019
24
August, 2021
14
October, 2017
8
February, 2021
Available data
2860
bam
2690
bigWig
1495
tsv
1486
bed narrowPeak
1071
fastq
930
bigBed narrowPeak
272
bed broadPeak
264
tagAlign
261
bigBed broadPeak
232
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
264
Homo sapiens
Biosample type
130
tissue
88
primary cell
26
in vitro differentiated cells
20
cell line
Organ
80
brain
66
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
Project
180
AMP
84
T1D
Genome assembly (visualization)
189
GRCh38
160
hg19
Lab
180
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
October, 2019
BIOSAMPLE
ASSAY
264 results
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Clear Filters
ChIP-seq
tissue
liver
50
caudate nucleus
15
substantia nigra
15
brain
14
cingulate gyrus
14
+ See 2 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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