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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
Assay category
278
DNA binding
Target of assay
210
histone
210
histone modification
120
narrow histone mark
90
broad histone mark
59
control
9
transcription factor
Date released
78
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
August, 2021
14
October, 2017
8
February, 2021
6
May, 2021
Available data
2738
bam
2472
bigWig
1379
bed narrowPeak
1207
tsv
949
fastq
933
bigBed narrowPeak
278
tagAlign
273
bed broadPeak
236
bigBed broadPeak
234
bed bed3+
104
txt
26
bed bedMethyl
26
bigBed bedMethyl
17
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
271
Homo sapiens
Biosample type
238
tissue
primary cell
20
cell line
20
in vitro differentiated cells
Organ
118
brain
82
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
278
AMP
Genome assembly (visualization)
135
GRCh38
127
hg19
Lab
278
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
biosample_type!
primary cell
BIOSAMPLE
ASSAY
278 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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