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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
Assay category
205
DNA binding
Target of assay
236
histone
236
histone modification
133
narrow histone mark
broad histone mark
67
control
5
transcription factor
Date released
50
May, 2020
49
October, 2019
May, 2021
40
August, 2017
37
November, 2017
17
August, 2021
8
February, 2021
4
October, 2017
Available data
2781
bam
2483
bigWig
1427
tsv
1308
bed narrowPeak
1240
fastq
800
bigBed narrowPeak
286
bed broadPeak
269
bigBed broadPeak
259
bed bed3+
205
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
202
Homo sapiens
Biosample type
162
tissue
20
in vitro differentiated cells
14
cell line
9
primary cell
Organ
73
brain
68
liver
10
connective tissue
8
pancreas
7
musculature of body
6
artery
6
blood vessel
6
heart
6
vasculature
4
adipose tissue
3
epithelium
1
pituitary gland
Project
205
AMP
Genome assembly (visualization)
108
hg19
99
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
May, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ChIP-seq
tissue
liver
59
substantia nigra
8
caudate nucleus
7
cingulate gyrus
7
layer of hippocampus
7
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
14
adipocyte
6
cell line
HepG2
6
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
primary cell
skeletal muscle myoblast
6
hepatocyte
3
See all biosamples
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