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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
Assay category
220
DNA binding
Target of assay
156
histone
156
histone modification
101
narrow histone mark
55
broad histone mark
55
control
9
transcription factor
Date released
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
8
February, 2021
6
May, 2021
Available data
2400
bam
2191
bigWig
1330
tsv
1175
bed narrowPeak
634
fastq
627
bigBed narrowPeak
236
bed bed3+
220
tagAlign
209
bed broadPeak
178
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
213
Homo sapiens
Biosample type
172
tissue
primary cell
40
in vitro differentiated cells
8
cell line
Organ
70
liver
52
brain
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
220
AMP
Genome assembly (visualization)
121
hg19
94
GRCh38
Lab
220
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
November, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
220 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
brain
14
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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