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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
Assay category
148
DNA binding
Target of assay
124
histone
124
histone modification
65
broad histone mark
59
narrow histone mark
15
control
9
transcription factor
Date released
90
May, 2021
26
August, 2017
24
August, 2021
November, 2017
8
February, 2021
Available data
1162
bam
1120
bigWig
657
fastq
578
bed narrowPeak
524
tsv
226
bigBed narrowPeak
153
zippedFastqFolder
148
tagAlign
68
bed bed3+
45
bed broadPeak
45
bigBed broadPeak
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
148
Homo sapiens
Biosample type
tissue
100
primary cell
40
in vitro differentiated cells
8
cell line
Organ
14
connective tissue
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
4
liver
3
pancreas
Project
84
T1D
64
AMP
Genome assembly (visualization)
121
GRCh38
121
hg19
Lab
84
Kyle Gaulton, UCSD
64
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
November, 2017
biosample_type!
tissue
BIOSAMPLE
ASSAY
148 results
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Clear Filters
ChIP-seq
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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