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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
17
WGBS
9
RRBS
Assay category
220
DNA binding
26
DNA methylation
Target of assay
156
histone
156
histone modification
101
narrow histone mark
55
broad histone mark
55
control
9
transcription factor
Date released
78
August, 2017
November, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
July, 2019
14
October, 2017
8
February, 2021
7
November, 2018
6
May, 2021
Available data
2400
bam
2231
bigWig
1330
tsv
1215
bed narrowPeak
634
fastq
627
bigBed narrowPeak
236
bed bed3+
220
tagAlign
209
bed broadPeak
178
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
239
Homo sapiens
Biosample type
197
tissue
primary cell
40
in vitro differentiated cells
9
cell line
Organ
72
liver
53
brain
25
pancreas
24
connective tissue
18
musculature of body
13
heart
10
adipose tissue
7
blood vessel
7
vasculature
6
artery
3
epithelium
2
spleen
1
kidney
1
limb
1
pericardium
1
pituitary gland
Project
246
AMP
Genome assembly (visualization)
130
hg19
111
GRCh38
Lab
246
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
November, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
246 results
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Clear Filters
ChIP-seq
WGBS
RRBS
tissue
liver
70
1
skeletal muscle tissue
15
2
brain
14
1
islet of Langerhans
9
1
pancreas
7
2
1
+ See 51 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
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