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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
ChIP-seq
Assay category
350
DNA binding
Target of assay
288
histone
288
histone modification
159
narrow histone mark
129
broad histone mark
57
control
5
transcription factor
Date released
84
May, 2021
78
November, 2017
63
August, 2017
50
May, 2020
49
October, 2019
14
October, 2017
8
February, 2021
4
August, 2021
Available data
2659
bam
2445
bigWig
1632
bed narrowPeak
1174
fastq
1068
tsv
1015
bigBed narrowPeak
350
tagAlign
318
bed broadPeak
282
bigBed broadPeak
242
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
343
Homo sapiens
Biosample type
230
tissue
100
primary cell
in vitro differentiated cells
20
cell line
Organ
118
brain
86
liver
16
pancreas
15
musculature of body
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
266
AMP
84
T1D
Genome assembly (visualization)
228
GRCh38
220
hg19
Lab
266
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
adipose tissue
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
350 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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