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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
ChIP-seq
Assay category
298
DNA binding
Target of assay
233
histone
233
histone modification
131
narrow histone mark
102
broad histone mark
64
control
1
transcription factor
Date released
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
2
February, 2021
Available data
2601
bam
2354
bigWig
1345
bed narrowPeak
1113
tsv
1101
fastq
872
bigBed narrowPeak
298
tagAlign
270
bed broadPeak
233
bigBed broadPeak
220
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
291
Homo sapiens
Biosample type
238
tissue
34
in vitro differentiated cells
14
cell line
12
primary cell
Organ
118
brain
86
liver
22
connective tissue
16
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
heart
6
vasculature
epithelium
1
pituitary gland
Project
298
AMP
Genome assembly (visualization)
150
GRCh38
142
hg19
Lab
298
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
epithelium
heart
month_released!
May, 2021
BIOSAMPLE
ASSAY
298 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cell line
HepG2
12
iPSC derived cell line
2
primary cell
skeletal muscle myoblast
12
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