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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
306
ChIP-seq
Assay category
306
DNA binding
Target of assay
263
histone
263
histone modification
134
narrow histone mark
129
broad histone mark
38
control
5
transcription factor
Date released
90
May, 2021
66
November, 2017
65
August, 2017
49
October, 2019
20
August, 2021
14
October, 2017
2
February, 2021
Available data
2526
bam
2353
bigWig
1358
tsv
1203
bed narrowPeak
887
fastq
601
bigBed narrowPeak
306
tagAlign
248
bed bed3+
242
bed broadPeak
205
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
19
bedpe bed3+
18
hic
11
bed bed3
7
bed bedgraph
7
csv
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
299
Homo sapiens
Biosample type
168
tissue
96
primary cell
40
in vitro differentiated cells
2
cell line
Organ
118
brain
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
6
artery
6
blood vessel
6
heart
vasculature
1
pituitary gland
Project
222
AMP
84
T1D
Genome assembly (visualization)
211
GRCh38
192
hg19
Lab
222
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
organ_slims!
liver
vasculature
BIOSAMPLE
ASSAY
306 results
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Clear Filters
ChIP-seq
tissue
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
brain
14
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
iPSC derived cell line
2
See all biosamples
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