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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
ChIP-seq
Assay category
308
DNA binding
Target of assay
308
histone
308
histone modification
169
narrow histone mark
139
broad histone mark
66
control
9
transcription factor
Date released
85
May, 2021
67
November, 2017
61
August, 2017
40
October, 2019
27
May, 2020
16
August, 2021
12
October, 2017
Available data
842
bigWig
824
bed narrowPeak
771
bam
377
bigBed narrowPeak
308
tagAlign
230
fastq
52
bed broadPeak
30
bigBed broadPeak
25
bed bed3+
1
tagAlign bed3+
Organism
302
Homo sapiens
Biosample type
173
tissue
98
primary cell
26
in vitro differentiated cells
11
cell line
Organ
99
brain
58
liver
19
connective tissue
15
pancreas
musculature of body
7
adipose tissue
4
epithelium
1
pituitary gland
Project
224
AMP
84
T1D
Genome assembly (visualization)
237
GRCh38
214
hg19
Lab
224
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
musculature of body
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
tissue
liver
44
substantia nigra
14
caudate nucleus
13
layer of hippocampus
13
brain
12
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
13
adipocyte
12
pancreatic PP cell
1
cell line
HepG2
11
See all biosamples
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