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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
7
DNase-seq
1
Hi-C
Assay category
40
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
transcription factor
5
control
2
RNA binding protein
Date released
35
August, 2017
4
June, 2019
3
May, 2021
2
November, 2018
2
October, 2019
2
September, 2017
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
41
Homo sapiens
Biosample type
43
tissue
3
in vitro differentiated cells
2
cell line
Organ
153
brain
96
liver
78
kidney
49
connective tissue
49
musculature of body
48
pancreas
36
heart
36
limb
25
epithelium
19
vasculature
18
ureter
17
blood vessel
14
adipose tissue
10
artery
4
eye
3
embryo
2
nerve
2
vein
1
pituitary gland
1
spleen
Project
48
AMP
Genome assembly (visualization)
41
hg19
37
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
2
inconsistent assembly
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
30
pancreas
7
2
body of pancreas
4
in vitro differentiated cells
pancreatic PP cell
3
cell line
Panc1
1
1
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