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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
7
DNase-seq
2
ATAC-seq
Assay category
19
DNA binding
9
DNA accessibility
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
3
control
1
transcription factor
Date released
16
August, 2017
4
June, 2019
3
May, 2021
2
November, 2018
1
March, 2019
1
October, 2017
1
October, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
21
Homo sapiens
Biosample type
24
tissue
3
in vitro differentiated cells
1
cell line
Organ
156
brain
138
liver
78
kidney
48
musculature of body
36
heart
36
limb
31
connective tissue
29
epithelium
28
pancreas
23
vasculature
19
blood vessel
18
ureter
10
adipose tissue
10
artery
4
eye
4
vein
2
nerve
1
pituitary gland
1
spleen
Project
28
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
26
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
islet of Langerhans
9
2
pancreas
7
2
body of pancreas
4
in vitro differentiated cells
pancreatic PP cell
3
cell line
Panc1
1
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