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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
22
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
72
DNA binding
32
DNA accessibility
Target of assay
58
histone
58
histone modification
34
broad histone mark
24
narrow histone mark
11
transcription factor
6
RNA binding protein
3
control
Date released
40
October, 2018
27
August, 2017
14
September, 2018
7
October, 2019
5
September, 2017
4
June, 2019
3
May, 2021
3
November, 2018
1
May, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
97
Homo sapiens
Biosample type
72
tissue
22
primary cell
7
cell line
3
in vitro differentiated cells
Organ
435
liver
194
brain
104
kidney
104
pancreas
100
heart
89
vasculature
85
blood vessel
84
limb
83
epithelium
62
musculature of body
54
blood
54
bodily fluid
50
connective tissue
31
artery
26
nerve
18
adipose tissue
18
ureter
13
spleen
13
vein
6
eye
1
pituitary gland
Project
104
AMP
Genome assembly (visualization)
97
hg19
91
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
26
4
pancreas
14
2
1
endocrine pancreas
14
islet of Langerhans
9
1
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
in vitro differentiated cells
pancreatic PP cell
3
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