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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
27
snATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
858
DNA binding
371
Transcription
102
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
18
May, 2022
14
September, 2018
10
November, 2018
9
August, 2017
8
October, 2017
7
August, 2020
5
September, 2017
3
September, 2020
1
March, 2019
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
0
tagAlign bed3+
Organism
102
Homo sapiens
Biosample type
60
primary cell
41
tissue
1
in vitro differentiated cells
Organ
61
pancreas
32
epithelium
4
connective tissue
4
liver
3
adipose tissue
3
brain
2
spleen
Project
65
AMP
37
HPAP
Genome assembly (visualization)
63
hg19
53
GRCh38
Lab
45
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
BIOSAMPLE
ASSAY
102 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 1 more…
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
brain
2
liver
2
omental fat pad
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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