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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
117
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
1
FAIRE-seq
Assay category
269
DNA accessibility
117
DNA binding
52
Transcription
41
DNA methylation
Target of assay
65
histone
65
histone modification
52
transcription factor
36
broad histone mark
29
narrow histone mark
10
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
73
November, 2017
41
August, 2017
19
September, 2020
10
October, 2019
9
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
473
Homo sapiens
Biosample type
213
tissue
203
primary cell
62
cell line
1
in vitro differentiated cells
Organ
103
epithelium
101
pancreas
78
kidney
66
liver
47
brain
46
musculature of body
36
limb
30
heart
18
ureter
18
vasculature
14
blood vessel
10
connective tissue
5
vein
4
artery
4
eye
3
adipose tissue
2
nerve
1
spleen
Project
326
AMP
153
HPAP
Genome assembly (visualization)
302
hg19
282
GRCh38
Lab
324
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
BIOSAMPLE
ASSAY
479 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
FAIRE-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
1
+ See 22 more…
cell line
HepG2
61
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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