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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
116
ChIP-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
196
DNA accessibility
116
DNA binding
Target of assay
64
histone
64
histone modification
52
transcription factor
36
broad histone mark
28
narrow histone mark
10
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
177
June, 2019
73
November, 2017
39
August, 2017
10
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2792
bam
2593
bigWig
1709
bed narrowPeak
1257
fastq
1117
tsv
1008
bigBed narrowPeak
376
tagAlign
308
bed broadPeak
272
bigBed broadPeak
242
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
306
Homo sapiens
Biosample type
207
tissue
62
cell line
43
primary cell
Organ
78
kidney
66
liver
47
brain
46
musculature of body
36
limb
30
heart
23
epithelium
21
pancreas
18
ureter
18
vasculature
14
blood vessel
connective tissue
5
vein
4
artery
eye
3
adipose tissue
2
nerve
1
spleen
Project
312
AMP
Genome assembly (visualization)
289
hg19
269
GRCh38
Lab
310
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
eye
connective tissue
BIOSAMPLE
ASSAY
312 results
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DNase-seq
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
61
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
1
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 13 more…
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