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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
49
total RNA-seq
13
single cell RNA-seq
Assay category
78
DNA accessibility
62
Transcription
Date released
78
June, 2019
57
August, 2021
5
February, 2021
Available data
183
bed narrowPeak
144
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
0
tar
Organism
140
Homo sapiens
Biosample type
130
tissue
10
primary cell
Organ
140
kidney
88
bone element
66
liver
47
brain
47
musculature of body
36
limb
30
heart
27
pancreas
23
epithelium
18
ureter
18
vasculature
14
blood vessel
10
connective tissue
5
vein
4
artery
4
eye
4
skeleton
3
adipose tissue
2
nerve
1
spleen
Project
140
AMP
Genome assembly (visualization)
78
GRCh38
71
hg19
Lab
83
AMP-T2D consortium
57
Katalin Susztak, Upenn
Audit category:
5
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
140 results
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DNase-seq
total RNA-seq
single cell RNA-seq
tissue
kidney
13
49
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney capillary endothelial cell
1
+ See 3 more…
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