Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
86
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
86
DNA binding
Target of assay
63
histone
63
histone modification
52
transcription factor
34
broad histone mark
narrow histone mark
10
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
60
November, 2017
26
August, 2017
October, 2019
9
November, 2018
3
October, 2017
1
March, 2019
1
November, 2020
Available data
2855
bam
2639
bigWig
1584
tsv
1316
bed narrowPeak
1248
fastq
843
bigBed narrowPeak
284
bed broadPeak
262
bigBed broadPeak
252
bed bed3+
215
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
283
Homo sapiens
Biosample type
194
tissue
55
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
60
liver
41
musculature of body
39
brain
32
limb
30
heart
18
ureter
16
epithelium
16
pancreas
9
connective tissue
9
vasculature
6
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
287
AMP
Genome assembly (visualization)
263
hg19
256
GRCh38
Lab
285
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
narrow histone mark
month_released!
October, 2019
BIOSAMPLE
ASSAY
287 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
2
kidney
13
muscle of leg
13
+ See 41 more…
cell line
HepG2
55
primary cell
skeletal muscle myoblast
1
8
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download