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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
Hi-C
1
FAIRE-seq
Assay category
13
DNA accessibility
3
3D chromatin structure
Date released
10
February, 2023
November, 2017
3
October, 2022
2
February, 2021
1
October, 2019
Available data
3000
bam
2835
bigWig
1600
tsv
1504
bed narrowPeak
1034
fastq
730
bigBed narrowPeak
320
tagAlign
273
bed bed3+
252
bed broadPeak
221
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
16
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
primary cell
5
tissue
1
cell line
Organ
6
connective tissue
4
bone element
4
epithelium
4
skeleton
3
pancreas
1
blood vessel
1
brain
1
liver
1
vasculature
1
vein
Project
13
AMP
3
HPAP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
13
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent replicate
month_released!
November, 2017
BIOSAMPLE
ASSAY
16 results
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ATAC-seq
Hi-C
FAIRE-seq
in vitro differentiated cells
chondrocyte
5
primary cell
endothelial cell of umbilical vein
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
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